3RJ8

Crystal structure of carbohydrate oxidase from Microdochium nivale


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.156

Literature

Macromolecules
Sequence Display for 3RJ8

Classification: OXIDOREDUCTASE

Total Structure Weight: 54052.39

Macromolecule Entities
Molecule Chains Length Organism Details
Carbohydrate oxidase A 473 Microdochium nivale EC#: 1.1.3.4 IUBMB
Fragment: mature enzyme
Gene Name(s): MnCO
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.156
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 133.71 α = 90.00
b = 56.96 β = 95.85
c = 87.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-15
  • Released Date: 2012-04-18
  • Deposition author(s): Duskova, J., Skalova, T., Stepankova, A., Koval, T., Hasek, J., Ostergaard, L.H., Fuglsang, C.C., Kolenko, P., Dohnalek, J.

Revision History

  • Version 1_0: 2012-04-18

    Type: Initial release

  • Version 1_1: 2017-09-27

    Type: Data collection, Refinement description