3R73

CDK2 in complex with inhibitor KVR-1-164

Structural Biology Knowledgebase: 3R73 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3R73

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35168.14

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 306 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
X87
Query on X87

A 4-[(3-aminopropyl)amino]-5-nitro-2-[(pyridin- 3-ylmethyl)amino]benzamide
C16 H20 N6 O3
RAPSXQPDFJOVLN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.200
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.53 α = 90.00
b = 71.61 β = 90.00
c = 72.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-22
  • Released Date: 2012-08-08
  • Deposition author(s): Betzi, S., Alam, R., Han, H., Becker, A., Schonbrunn, E.

Revision History

No revisions since initial release