3QXY

Human SETD6 in complex with RelA Lys310


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 3QXY

Classification: TRANSFERASE

Total Structure Weight: 107346.27

Macromolecule Entities
Molecule Chains Length Organism Details
N-lysine methyltransferase SETD6 A, B 449 Homo sapiens EC#: 2.1.1 IUBMB
Gene Name(s): SETD6 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Transcription factor p65 P, Q 15 Homo sapiens Fragment: UNP Q04206 residues 302-316
Gene Name(s): RELA Gene View NFKB3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAM
Query on SAM

A, B S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.171
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 61.46 α = 78.33
b = 64.99 β = 70.05
c = 73.89 γ = 63.75

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-02
  • Released Date: 2011-05-25
  • Deposition author(s): Chang, Y., Levy, D., Horton, J.R., Peng, J., Zhang, X., Gozani, O., Cheng, X.

Revision History

  • Version 1_0: 2011-05-25

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2011-08-10

    Type: Database references

  • Version 1_3: 2011-09-07

    Type: Database references