3QCU

Crystal structure of the LT3015 antibody Fab fragment in complex with lysophosphatidic acid (14:0)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 3QCU

Classification: IMMUNE SYSTEM

Total Structure Weight: 96521.79

Macromolecule Entities
Molecule Chains Length Organism Details
LT3015 antibody Fab fragment, heavy chain H, I 223 Homo sapiens Gene Name(s): DKFZp686P15220
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LT3015 antibody Fab fragment, light chain L, M 218 Homo sapiens Gene Name(s): IGKC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NKN
Query on NKN

H, I (2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate
14:0 LPA, myristoyl lysophosphatidic acid (Synonym)
C17 H35 O7 P
FAZBDRGXCKPVJU-MRXNPFEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.221
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 86.53 α = 90.00
b = 184.35 β = 90.00
c = 130.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-17
  • Released Date: 2011-03-30
  • Deposition author(s): Fleming, J.K., Wojciak, J.M., Campbell, M.-A., Huxford, T.

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2017-07-26
    Type: Refinement description, Source and taxonomy