3QCT

Crystal structure of the humanized apo LT3015 anti-lysophosphatidic acid antibody Fab fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 3QCT

Classification: IMMUNE SYSTEM

Total Structure Weight: 48220.77

Macromolecule Entities
Molecule Chains Length Organism Details
LT3015 antibody Fab fragment, heavy chain H 223 Homo sapiens Gene Name(s): DKFZp686P15220
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LT3015 antibody Fab fragment, light chain L 218 Homo sapiens Gene Name(s): IGKC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

L TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.238
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 84.52 α = 90.00
b = 84.52 β = 90.00
c = 145.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-17
  • Released Date: 2011-03-30
  • Deposition author(s): Fleming, J.K., Wojciak, J.M., Campbell, M.-A., Huxford, T.

Revision History

  • Version 1_0: 2011-03-30

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-07-26

    Type: Refinement description, Source and taxonomy

  • Version 1_3: 2017-11-08

    Type: Refinement description