3Q4G

Structure of NAD synthetase from Vibrio cholerae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 3Q4G

Classification: LIGASE

Total Structure Weight: 61991.44

Macromolecule Entities
Molecule Chains Length Organism Details
NH(3)-dependent NAD(+) synthetase A, B 279 Vibrio cholerae EC#: 6.3.1.5 IUBMB
Fragment: unp residues 11-285
Mutation: C37Y
Gene Name(s): nadE VC_A0207
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 93.43 α = 90.00
b = 93.43 β = 90.00
c = 165.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-23
  • Released Date: 2011-01-26
  • Deposition author(s): Anderson, S.M., Wawrzak, Z., Onopriyenko, O., Peterson, S.N., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2014-10-08
    Type: Database references
  • 2014-11-12
    Type: Structure summary