3PYA

Crystal structure of ent-copalyl diphosphate synthase from Arabidopsis thaliana in complex with (S)-15-aza-14,15-dihydrogeranylgeranyl thiolodiphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 3PYA

Classification: ISOMERASE

Total Structure Weight: 85640.77

Macromolecule Entities
Molecule Chains Length Organism Details
Ent-copalyl diphosphate synthase, chloroplastic A 727 Arabidopsis thaliana EC#: 5.5.1.13 IUBMB
Gene Name(s): GA1 ABC33 CPS CPS1 Gene View TPSGA1 At4g02780 T5J8.9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AG8
Query on AG8

A S-[(2E,6E,10E)-14-(dimethylamino)-3,7,11- trimethyltetradeca-2,6,10-trien-1-yl] trihydrogen thiodiphosphate
C19 H37 N O6 P2 S
WNRLOKILDUQQLN-WNWLUAIZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PE
Query on 1PE

A PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.172
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.32 α = 90.00
b = 114.31 β = 90.00
c = 129.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-12
  • Released Date: 2011-05-25
  • Deposition author(s): Koksal, M., Christianson, D.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4