3PS2

Crystal structure of the Escherichia Coli LPXC/LPC-012 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 3PS2

Classification: HYDROLASE / ANTIBIOTIC

Total Structure Weight: 34777.97

Macromolecule Entities
Molecule Chains Length Organism Details
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase A 300 Escherichia coli EC#: 3.5.1 IUBMB
Fragment: UNP residues 1-300
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZH4
Query on ZH4

A 4-[4-(3-aminophenyl)buta-1,3-diyn-1-yl]-N- [(2S,3R)-3-hydroxy-1-nitroso-1-oxobutan-2- yl]benzamide
C21 H17 N3 O4
HOPLGMFTTVLMDZ-KUHUBIRLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UKW
Query on UKW

A 4-ethynyl-N-[(1S,2R)-2-hydroxy-1-(oxocarbamoyl)propyl]benzamide
C13 H12 N2 O4
JJXZDQZGPLQGCP-KCJUWKMLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.207
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 107.45 α = 90.00
b = 107.45 β = 90.00
c = 53.42 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-30
  • Released Date: 2011-01-19
  • Deposition author(s): Lee, C.-J, Zhou, P.

Revision History

  • 2011-07-13
    Type: Version format compliance