3PN8

The crystal structure of 6-phospho-beta-glucosidase from Streptococcus mutans UA159


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 3PN8

Classification: HYDROLASE

Total Structure Weight: 115053.25

Macromolecule Entities
Molecule Chains Length Organism Details
Putative phospho-beta-glucosidase A, B 480 Streptococcus mutans EC#: 3.2.1.86 IUBMB
Gene Name(s): bgl SMU_1601
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A, B FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.163
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 58.89 α = 90.00
b = 91.04 β = 98.69
c = 98.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-18
  • Released Date: 2010-12-15
  • Deposition author(s): Tan, K., Li, H., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2012-08-08
    Type: Other | Details: update PSI information
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4