3PMM

The crystal structure of a possible member of GH105 family from Klebsiella pneumoniae subsp. pneumoniae MGH 78578


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.156

Literature

Macromolecules
Sequence Display for 3PMM

Classification: HYDROLASE

Total Structure Weight: 45322.68

Macromolecule Entities
Molecule Chains Length Organism Details
Putative cytoplasmic protein A 382 Klebsiella pneumoniae Gene Name(s): KPN_02389
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.156
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 143.09 α = 90.00
b = 143.09 β = 90.00
c = 129.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-17
  • Released Date: 2010-12-29
  • Deposition author(s): Tan, K., Hatzos-Skintges, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Source and taxonomy, Version format compliance
  • 2012-08-08
    Type: Other