3PJ9

Crystal structure of a Nucleoside Diphosphate Kinase from Campylobacter jejuni


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 3PJ9

Classification: TRANSFERASE

Total Structure Weight: 62896.32

Macromolecule Entities
Molecule Chains Length Organism Details
Nucleoside diphosphate kinase A, B, C, D 140 Campylobacter jejuni EC#: 2.7.4.6 IUBMB
Gene Name(s): ndk Cj0332c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 85.67 α = 90.00
b = 88.14 β = 90.00
c = 110.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-09
  • Released Date: 2010-11-24
  • Deposition author(s): Filippova, E.V., Wawrzak, Z., Onopriyenko, O., Edwards, A., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4