3PGJ

2.49 Angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroE) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with shikimate

Structural Biology Knowledgebase: 3PGJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 3PGJ

Classification: OXIDOREDUCTASE

Total Structure Weight: 132795.23

Macromolecule Entities
Molecule Chains Length Organism Details
Shikimate dehydrogenase A, B, C, D 302 Vibrio cholerae EC#: 1.1.1.25 IUBMB
Gene Name(s): aroE VC_0056
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SKM
Query on SKM

A, B, C, D (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE- 1-CARBOXYLIC ACID
SHIKIMATE (Synonym)
C7 H10 O5
JXOHGGNKMLTUBP-HSUXUTPPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 75.53 α = 90.00
b = 83.66 β = 93.51
c = 79.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-02
  • Released Date: 2010-11-24
  • Deposition author(s): Halavaty, A.S., Light, S.H., Shuvalova, L., Papazisi, L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4