3PEV

S. cerevisiae Dbp5 L327V C-terminal domain bound to Gle1 and IP6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 3PEV

Classification: HYDROLASE

Total Structure Weight: 56868.92

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent RNA helicase DBP5 A 188 Saccharomyces cerevisiae EC#: 3.6.4.13 IUBMB
Fragment: Dbp5-CTD
Mutation: L327V
Gene Name(s): DBP5 RAT8 YOR046C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nucleoporin GLE1 B 297 Saccharomyces cerevisiae Gene Name(s): GLE1 Gene View BRR3 RSS1 YDL207W D1049
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IHP
Query on IHP

B INOSITOL HEXAKISPHOSPHATE
C6 H18 O24 P6
IMQLKJBTEOYOSI-GPIVLXJGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.202
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 110.87 α = 90.00
b = 110.87 β = 90.00
c = 201.91 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-27
  • Released Date: 2011-03-23
  • Deposition author(s): Montpetit, B., Thomsen, N.D., Helmke, K.J., Seeliger, M.A., Berger, J.M., Weis, K.

Revision History

  • 2011-07-13
    Type: Version format compliance