3PDS

Irreversible Agonist-Beta2 Adrenoceptor Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 3PDS

Classification: Membrane Protein / Hydrolase

Total Structure Weight: 53860.85

Macromolecule Entities
Molecule Chains Length Organism Details
Fusion protein Beta-2 adrenergic receptor/Lysozyme A 458 Homo sapiens Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Mutation: E27Q, H93C, N187E, C1054T, C1097A
Gene Name(s): E ADRB2 Gene View ADRB2R B2AR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: β2 adrenergic receptor


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ERC
Query on ERC

A 8-hydroxy-5-[(1R)-1-hydroxy-2-({2-[3-methoxy- 4-(3-sulfanylpropoxy)phenyl]ethyl}amino)ethyl]quinolin- 2(1H)-one
C23 H28 N2 O5 S
WAQRESHSGHIXBV-IBGZPJMESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CLR
Query on CLR

A CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.238
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 282.44 α = 90.00
b = 40.04 β = 90.00
c = 65.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-24
  • Released Date: 2011-01-12
  • Deposition author(s): Rosenbaum, D.M., Zhang, C., Lyons, J.A., Holl, R., Aragao, D., Arlow, D.H., Rasmussen, S.G.F., Choi, H.-J., DeVree, B.T., Sunahara, R.K., Chae, P.S., Gellman, S.H., Dror, R.O., Shaw, D.E., Weis, W.I., Caffrey, M., Gmeiner, P., Kobilka, B.K.

Revision History

  • Version 1_0: 2011-01-12

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-07-26

    Type: Refinement description, Source and taxonomy