3P3B

CRYSTAL STRUCTURE OF Galacturonate DEHYDRATASE FROM GEOBACILLUS SP. COMPLEXED WITH D-TARTRATE

Structural Biology Knowledgebase: 3P3B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.216

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3P3B

Classification: LYASE

Total Structure Weight: 88244.79

Macromolecule Entities
Molecule Chains Length Organism Details
Mandelate racemase/muconate lactonizing protein A, B 392 Paenibacillus sp. y412mc10 Gene Name(s): GYMC10_3367

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TAR
Query on TAR

A, B D(-)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-LWMBPPNESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.216
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 158.86 α = 90.00
b = 66.05 β = 95.48
c = 75.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-04
  • Released Date: 2011-06-29
  • Deposition author(s): Fedorov, A.A., Fedorov, E.V., Groninger-Poe, F., Gerlt, J.A., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2011-12-14
    Type: Citation | Details: Correct typo in citation
  • 2011-12-14
    Type: Entry title | Details: Correct typo in title
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4