3P0Y

anti-EGFR/HER3 Fab DL11 in complex with domain III of EGFR extracellular region


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 3P0Y

Classification: IMMUNE SYSTEM

Total Structure Weight: 72671.04

Macromolecule Entities
Molecule Chains Length Organism Details
Epidermal growth factor receptor A 214 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: domain III, UNP residues 334-540
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fab DL11 heavy chain H 228 Homo sapiens
Fab DL11 light chain L 214 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUL
Query on FUL

A BETA-L-FUCOSE
6-DEOXY-BETA-L-GALACTOSE (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.181
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 81.93 α = 90.00
b = 200.68 β = 90.00
c = 49.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-29
  • Released Date: 2011-10-26
  • Deposition author(s): Eigenbrot, C., Shia, S.

Revision History

  • 2012-03-21
    Type: Database references