3OP0

Crystal structure of Cbl-c (Cbl-3) TKB domain in complex with EGFR pY1069 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 3OP0

Classification: SIGNALING PROTEIN / SIGNALING PROTEIN REGULATOR

Total Structure Weight: 75084.48

Macromolecule Entities
Molecule Chains Length Organism Details
Signal transduction protein CBL-C A, B 323 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: CBL N-terminal, UNP residues 9-323
Mutation: A64E
Gene Name(s): CBLC Gene View CBL3 RNF57
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Epidermal growth factor receptor C, D 11 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: EGFR, UNP residues 1066-1076
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A, B NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 3 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A, B L-PEPTIDE LINKING C3 H7 N O3 S CYS
CSD
Query on CSD
A, B L-PEPTIDE LINKING C3 H7 N O4 S CYS
PTR
Query on PTR
C, D L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.214
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 90.25 α = 90.00
b = 90.25 β = 90.00
c = 191.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-31
  • Released Date: 2010-10-20
  • Deposition author(s): Chaikuad, A., Guo, K., Cooper, C.D.O., Ayinampudi, V., Krojer, T., Ugochukwu, E., Muniz, J.R.C., Vollmar, M., Canning, P., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Bountra, C., Bullock, A., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance