3O47

Crystal structure of ARFGAP1-ARF1 fusion protein

Structural Biology Knowledgebase: 3O47 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3O47

Classification: HYDROLASE HYDROLASE ACTIVATOR

Total Structure Weight: 76907.92

Macromolecule Entities
Molecule Chains Length Organism Details
ADP-ribosylation factor GTPase-activating protein 1, ADP-ribosylation factor 1 A, B 329 Homo sapiens Fragment: ARF1GAP, UNP residues 1-140, ARF1, UNP residues 11-181
Gene Name(s): ARF1 Gene View ARFGAP1 Gene View ARF1GAP

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, B GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.206
  • Space Group: I 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.30 α = 90.00
b = 129.16 β = 90.00
c = 157.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-26
  • Released Date: 2010-08-11
  • Deposition author(s): Wang, H., Tong, Y., Nedyalkova, L., Tempel, W., Guan, X., Crombet, L., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4