3NMD

Crystal structure of the leucine zipper domain of cGMP dependent protein kinase I beta


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 3NMD

Classification: TRANSFERASE

Total Structure Weight: 44556.10

Macromolecule Entities
Molecule Chains Length Organism Details
cGMP Dependent PRotein Kinase A, B, C, D, E 72 Homo sapiens EC#: 2.7.11.12 IUBMB
Fragment: Dimerization docking domain, UNP residues 4-55
Mutation: K41M
Gene Name(s): PRKG1 Gene View PRKG1B PRKGR1A PRKGR1B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEZ
Query on HEZ

A, C, D, E HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

E GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.195
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 62.77 α = 90.00
b = 77.31 β = 90.00
c = 148.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-06-22
  • Released Date: 2010-09-08
  • Deposition author(s): Kim, C., Casteel, D.E., Smith-Nguyen, E.V., Sankaran, B., Berkeley Structural Genomics Center (BSGC)

Revision History

  • 2011-07-13
    Type: Version format compliance