3NL9

Crystal structure of a putative NTP pyrophosphohydrolase (Exig_1061) from EXIGUOBACTERIUM SP. 255-15 at 1.78 A resolution

Structural Biology Knowledgebase: 3NL9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 3NL9

Classification: HYDROLASE

Total Structure Weight: 19521.40

Macromolecule Entities
Molecule Chains Length Organism Details
putative NTP pyrophosphohydrolase A 171 Exiguobacterium sibiricum Gene Name(s): Exig_1061
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 52.09 α = 90.00
b = 69.04 β = 111.81
c = 50.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-06-21
  • Released Date: 2010-07-21
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)
  • Previous versions: 2RFP 3MQU

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4