3N2B

1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (lysA) from Vibrio cholerae.

Structural Biology Knowledgebase: 3N2B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 3N2B

Classification: LYASE

Total Structure Weight: 196449.69

Macromolecule Entities
Molecule Chains Length Organism Details
Diaminopimelate decarboxylase A, B, C, D 441 Vibrio cholerae EC#: 4.1.1.20 IUBMB
Gene Name(s): lysA VC_0125
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 45.39 α = 105.31
b = 80.33 β = 93.62
c = 118.69 γ = 90.52

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-17
  • Released Date: 2010-06-09
  • Deposition author(s): Minasov, G., Halavaty, A., Shuvalova, L., Dubrovska, I., Winsor, J., Papazisi, L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4