3MVQ

Bovine Glutamate dehydrogenase complexed with zinc


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.94 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 3MVQ

Classification: OXIDOREDUCTASE

Total Structure Weight: 344092.84

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate dehydrogenase 1, mitochondrial A, B, C..., D, E, FA, B, C, D, E, F 501 Bos taurus EC#: 1.4.1.3 IUBMB
Fragment: Glutamate dehydrogenase, residues 58-558
Gene Name(s): GLUD1 Gene View GLUD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B, C, D, E, F NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GTP
Query on GTP

A, B, C, D, E, F GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLU
Query on GLU

A, B, C, D, E, F GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D, E, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.94 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.223
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 121.11 α = 90.00
b = 98.76 β = 101.55
c = 165.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-04
  • Released Date: 2011-05-04
  • Deposition author(s): Smith, T.J., Li, M.

Revision History

  • Version 1_0: 2011-05-04

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2011-08-31

    Type: Database references