3MV5

Crystal structure of Akt-1-inhibitor complexes

Structural Biology Knowledgebase: 3MV5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3MV5

Classification: TRANSFERASE

Total Structure Weight: 41003.89

Macromolecule Entities
Molecule Chains Length Organism Details
v-akt murine thymoma viral oncogene homolog 1 (AKT1) A 342 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Kinase Domain
Mutation: S473D
Gene Name(s): AKT1 Gene View PKB RAC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GSK3-beta peptide C 10 Homo sapiens EC#: 2.7.11.26 IUBMB
Fragment: 10 residue peptide from GSK3-b (Residues 3-12)
Gene Name(s): GSK3B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XFE
Query on XFE

A (3R)-1-(5-methyl-7H-pyrrolo[2,3-d]pyrimidin- 4-yl)pyrrolidin-3-amine
C11 H15 N5
SMTIKTZYKPWXQP-MRVPVSSYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
XFE IC50: 180 nM (99) BindingDB

IC50: 180 nM  BindingMOAD
IC50: 180 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.200
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.71 α = 90.00
b = 55.42 β = 104.00
c = 93.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-03
  • Released Date: 2010-06-02
  • Deposition author(s): Pandit, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4