3MSC

Glycogen phosphorylase complexed with 2-nitrobenzaldehyde-4-(beta-D-glucopyranosyl)-thiosemicarbazone

Structural Biology Knowledgebase: 3MSC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3MSC

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 98294.86

Macromolecule Entities
Molecule Chains Length Organism Details
Glycogen phosphorylase, muscle form A 842 Oryctolagus cuniculus EC#: 2.4.1.1 IUBMB
Gene Name(s): PYGM Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
24S
Query on 24S

A N-({(2Z)-2-[(2-nitrophenyl)methylidene]hydrazino}carbonothioyl)- beta-D-glucopyranosylamine
2-nitrobenzaldehyde-4-(beta-D-glucopyranosyl) thiosemicarbazone (Synonym)
C14 H18 N4 O7 S
HIBBBAGNJNCOKR-ARDSGTFASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
24S N/A in BindingDB
IC50: 484200 nM  BindingMOAD
IC50: 484200 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LLP
Query on LLP
A L-PEPTIDE LINKING C14 H22 N3 O7 P LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.183
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 128.64 α = 90.00
b = 128.64 β = 90.00
c = 116.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-04-29
  • Released Date: 2011-03-16
  • Deposition author(s): Alexacou, K.-M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4