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Glycogen phosphorylase complexed with 2-nitrobenzaldehyde-4-(beta-D-glucopyranosyl)-thiosemicarbazone
3MSC
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/transferase Inhibitor
    Structure Weight: 98294.86
    Molecule: Glycogen phosphorylase, muscle form
    Polymer: 1 Type: protein Length: 842
    Chains: A
    EC#: 2.4.1.1   
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for PYGM
    UniProtKB: Protein Feature View | Search PDB | P00489  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
     
  •   Related PDB Entries Hide
    Identifier Details
    3MQF   
    3MRT   
    3MRV   
    3MRX   
    3MS2   
    3MS4   
    3MS7   
    3MT7   
    3MT8   
    3MT9   
    3MTA   
    3MTB   
    3MTD   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    24S
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    24S C14 H18 N4 O7 S
    N-({(2Z)-2-[(2-nitrophenyl)methylidene]hydrazino}carbonothioyl)- beta-D-glucopyranosylamine
    24S:3MSC
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    24S
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    24S
    N/Ain BindingDB
    IC50: 484200 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    LLP
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    LLP C14 H24 N3 O7 P LYS lPeptideLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Alexacou, K.-M.

    Deposition:   2010-04-29
    Release:   2011-03-16
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.95
    R-Value: 0.184 (obs.)
    R-Free: 0.214
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 128.64 α = 90.00 
    b = 128.64 β = 90.00 
    c = 116.36 γ = 90.00