3MJG

The structure of a platelet derived growth factor receptor complex

Structural Biology Knowledgebase: 3MJG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3MJG

Classification: Hormone / Transferase

Total Structure Weight: 107276.94

Macromolecule Entities
Molecule Chains Length Organism Details
Platelet-derived growth factor subunit B A, B 172 Homo sapiens Fragment: UNP residues 21-185
Gene Name(s): PDGFB Gene View PDGF2 SIS
Beta-type platelet-derived growth factor receptor X, Y 289 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: UNP residues 33-314
Gene Name(s): PDGFRB Gene View PDGFR PDGFR1

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

X, Y N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol
NDG
Query on NDG

X 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.237
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.47 α = 90.00
b = 116.82 β = 90.00
c = 134.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-04-12
  • Released Date: 2010-06-16
  • Deposition author(s): Shim, A.H.R., He, X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4