3MJ3

Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate

Structural Biology Knowledgebase: 3MJ3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.227

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3MJ3

Classification: RNA

Total Structure Weight: 14315.16

Macromolecule Entities
Molecule Chains Length Organism Details
Domain 3 of the cricket paralysis virus intergenic region IRES RNA B 29 synthetic
RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3') C 14 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SE4
Query on SE4

B, C SELENATE ION
O4 Se
QYHFIVBSNOWOCQ-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.227
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.26 α = 90.00
b = 59.26 β = 90.00
c = 99.78 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2010-04-12
  • Released Date: 2010-05-19
  • Deposition author(s): Kieft, J.S., Chase, E., Costantino, D.A., Golden, B.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4