3MBV

Structure of bacterirhodopsin crystallized in betta-XylOC(16+4) meso phase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 3MBV

Classification: MEMBRANE PROTEIN

Total Structure Weight: 27529.51

Macromolecule Entities
Molecule Chains Length Organism Details
Bacteriorhodopsin A 248 Halobacterium salinarum Fragment: UNP residues 14-261
Gene Name(s): bop VNG_1467G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Bacterial and Algal Rhodopsins

Protein Name: Bacteriorhodopsin (BR)


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BXC
Query on BXC

A (3R,7R,11R)-3,7,11,15-tetramethylhexadecyl alpha- D-ribopyranoside
C25 H50 O5
ZSTFWXWLAGSUTP-RJQIIPCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.181
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 61.35 α = 90.00
b = 61.35 β = 90.00
c = 109.79 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-26
  • Released Date: 2010-11-03
  • Deposition author(s): Borshchevskiy, V., Moiseeva, E., Kuklin, A., Bueldt, G., Hato, M., Gordeliy, V.

Revision History

  • Version 1_0: 2010-11-03

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance