3MAZ

Crystal Structure of the Human BRDG1/STAP-1 SH2 Domain in Complex with the NTAL pTyr136 Peptide

Structural Biology Knowledgebase: 3MAZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3MAZ

Classification: SIGNALING PROTEIN

Total Structure Weight: 15582.62

Macromolecule Entities
Molecule Chains Length Organism Details
Signal-transducing adaptor protein 1 A 125 Homo sapiens Fragment: UNP Residues 167-285, SH2 domain
Mutation: C269A
Gene Name(s): STAP1 Gene View BRDG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CheD family protein B 12 Homo sapiens Mutation: C142A
Details: pTyr136 peptide
Gene Name(s): LAT2 Gene View LAB NTAL WBS15 WBSCR15 WBSCR5 HSPC046
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MLI
Query on MLI

A MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
B L-PEPTIDE LINKING C9 H12 N O6 P TYR
NH2
Query on NH2
B NON-POLYMER H2 N --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.212
  • Space Group: P 62 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.64 α = 90.00
b = 72.64 β = 90.00
c = 97.84 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-24
  • Released Date: 2010-05-12
  • Deposition author(s): Kaneko, T., Huang, H., Zhao, B., Li, L., Liu, H., Voss, C.K., Wu, C., Schiller, M.R., Li, S.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4