3L5O

Crystal structure of protein with unknown function from DUF364 family (ZP_00559375.1) from Desulfitobacterium hafniense DCB-2 at 2.01 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 3L5O

Classification: Adenosyl binding protein

Total Structure Weight: 61645.11

Macromolecule Entities
Molecule Chains Length Organism Details
uncharacterized protein from DUF364 family A, B 270 Desulfitobacterium hafniense Gene Name(s): Dhaf_4260
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IMD
Query on IMD

A, B IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 120.64 α = 90.00
b = 120.64 β = 90.00
c = 75.20 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-22
  • Released Date: 2010-02-02
  • Deposition author(s): Joint Center for Structural Genomics, Joint Center for Structural Genomics (JCSG)
  • Previous versions: 2H1Q

Revision History

  • Version 1_0: 2010-02-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance