3L0L

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

Structural Biology Knowledgebase: 3L0L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3L0L

Classification: TRANSCRIPTION

Total Structure Weight: 61780.36

Macromolecule Entities
Molecule Chains Length Organism Details
Nuclear receptor ROR-gamma A, B 248 Homo sapiens Fragment: RORgamma
Gene Name(s): RORC Gene View NR1F3 RORG RZRG
SCR2-2 C, E 13 Homo sapiens Fragment: SRC2-2
Gene Name(s): NCOA2 Gene View BHLHE75 SRC2 TIF2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HC3
Query on HC3

A, B 25-HYDROXYCHOLESTEROL
25-DIOL, (Synonym)
C27 H46 O2
INBGSXNNRGWLJU-ZHHJOTBYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HC3 EC50: 20 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.186
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.78 α = 90.00
b = 86.26 β = 90.00
c = 91.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-10
  • Released Date: 2010-03-16
  • Deposition author(s): Martynowski, D., Li, Y.

Revision History

  • 2015-01-21
    Type: Sequence database correspondence | Details: Add struct_ref_seq
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4