3KZL

Crystal structure of BA2930 mutant (H183G) in complex with AcCoA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 3KZL

Classification: TRANSFERASE

Total Structure Weight: 124939.48

Macromolecule Entities
Molecule Chains Length Organism Details
Aminoglycoside N3-acetyltransferase A, B, C, D 268 Bacillus anthracis Mutation: H183G
Gene Name(s): yokD AB163_26920 AB164_06220 AB165_07600 AB166_20025 AB167_07525 AB168_00935 AB169_15895 AB170_04040 AB171_14930 AB893_14410 ADK17_15480 ADK18_14245 ADT20_27950 ADT21_28545 BASH2_02965 BF27_4683
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACO
Query on ACO

A, B, C, D ACETYL COENZYME *A
C23 H38 N7 O17 P3 S
ZSLZBFCDCINBPY-ZSJPKINUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EPE
Query on EPE

B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ACO N/A in BindingDB
Kd: 6100 nM  BindingMOAD
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 71.83 α = 90.00
b = 109.18 β = 111.91
c = 73.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-08
  • Released Date: 2009-12-22
  • Deposition author(s): Klimecka, M.M., Chruszcz, M., Porebski, P.J., Cymborowski, M., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2009-12-22

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2011-08-03

    Type: Database references