3KD3

Crystal structure of a phosphoserine phosphohydrolase-like protein from Francisella tularensis subsp. tularensis SCHU S4

Structural Biology Knowledgebase: 3KD3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 3KD3

Classification: UNKNOWN FUNCTION

Total Structure Weight: 50128.86

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphoserine phosphohydrolase-like protein A, B 219 Francisella tularensis Gene Name(s): FTT_0568 BZ14_259
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 72.57 α = 90.00
b = 78.80 β = 90.00
c = 87.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-10-22
  • Released Date: 2009-12-15
  • Deposition author(s): Nocek, B., Zhou, M., Peterson, S., Anderson, W., Joachimiak, A., Csgid

Revision History

  • 2017-02-08
    Type: Citation | Details: --
  • 2017-02-08
    Type: Function and keywords | Details: --
  • 2017-02-08
    Type: Entry authorship | Details: --
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4