3K96

2.1 Angstrom resolution crystal structure of glycerol-3-phosphate dehydrogenase (gpsA) from Coxiella burnetii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 3K96

Classification: OXIDOREDUCTASE

Total Structure Weight: 78265.34

Macromolecule Entities
Molecule Chains Length Organism Details
Glycerol-3-phosphate dehydrogenase [NAD(P)+] A, B 356 Coxiella burnetii EC#: 1.1.1.94 IUBMB
Gene Name(s): gpsA CBU_1518
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A, B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

B BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 85.27 α = 90.00
b = 88.45 β = 90.00
c = 97.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-10-15
  • Released Date: 2009-10-27
  • Deposition author(s): Minasov, G., Halavaty, A., Shuvalova, L., Dubrovska, I., Winsor, J., Peterson, S.N., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2009-10-27

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Refinement description, Source and taxonomy, Version format compliance