3JD5

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.0 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 3JD5

Classification: RIBOSOME

Total Structure Weight: 1123253.88


Macromolecule Entities
Molecule Chains Length Organism Details
28S ribosomal protein S2, mitochondrial B 293 Bos taurus Gene Name(s): MRPS2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S24, mitochondrial C 167 Bos taurus Gene Name(s): MRPS24 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S5, mitochondrial E 430 Bos taurus Gene Name(s): MRPS5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S6, mitochondrial F 124 Bos taurus Gene Name(s): MRPS6 Gene View RPMS6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S7, mitochondrial G 242 Bos taurus Gene Name(s): MRPS7 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S9, mitochondrial I 396 Bos taurus Gene Name(s): MRPS9 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S10, mitochondrial J 201 Bos taurus Gene Name(s): MRPS10 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S11, mitochondrial K 197 Bos taurus Gene Name(s): MRPS11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S12, mitochondrial L 139 Bos taurus Gene Name(s): MRPS12 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S14, mitochondrial N 128 Bos taurus Gene Name(s): MRPS14 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S15, mitochondrial O 256 Bos taurus Gene Name(s): MRPS15 Gene View RPMS15
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S16, mitochondrial P 135 Bos taurus Gene Name(s): MRPS16 Gene View RPMS16
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S17, mitochondrial Q 130 Bos taurus Gene Name(s): MRPS17 Gene View RPMS17
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S18c, mitochondrial R 143 Bos taurus Gene Name(s): MRPS18C Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S21, mitochondrial U 87 Bos taurus Gene Name(s): MRPS21 Gene View RPMS21
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S22, mitochondrial a 359 Bos taurus Gene Name(s): MRPS22 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S23, mitochondrial b 190 Bos taurus Gene Name(s): MRPS23 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S25, mitochondrial c 173 Bos taurus Gene Name(s): MRPS25 Gene View RPMS25
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S26, mitochondrial d 205 Bos taurus Gene Name(s): MRPS26 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S27, mitochondrial e 415 Bos taurus Gene Name(s): MRPS27 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S28, mitochondrial f 189 Bos taurus Gene Name(s): MRPS28 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S29, mitochondrial g 397 Bos taurus Gene Name(s): DAP3 Gene View MRPS29
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S31, mitochondrial h 386 Bos taurus Gene Name(s): MRPS31 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S33, mitochondrial i 106 Bos taurus Gene Name(s): MRPS33 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S34, mitochondrial j 218 Bos taurus Gene Name(s): MRPS34 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S35, mitochondrial k 325 Bos taurus Gene Name(s): MRPS35 Gene View MRPS28 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Coiled-coil-helix-coiled-coil-helix domain containing 1 m 118 Bos taurus Gene Name(s): CHCHD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Aurora kinase A interacting protein 1 n 199 Bos taurus Gene Name(s): AURKAIP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Pentatricopeptide repeat domain-containing protein 3, mitochondrial o 575 Bos taurus Gene Name(s): PTCD3 Gene View MRPS39
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
28S ribosomal protein S18b, mitochondrial p 258 Bos taurus Gene Name(s): MRPS18B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
unknown s, z 17 Bos taurus
Macromolecule Entities
Molecule Chains Length Organism Details
28S ribosomal RNA, mitochondial A 955 Bos taurus

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
o, s, z L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.0 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-08
  • Released Date: 2016-07-13
  • Deposition author(s): Kaushal, P.S., Sharma, M.R., Booth, T.M., Haque, E.M., Tung, C.S., Sanbonmatsu, K.Y., Spremulli, L.L., Agrawal, R.K.
  • This entry supercedes: 3J6V

Revision History

  • Version 1_0: 2016-07-13

    Type: Initial release