3JTI

Crystal structure of the complex formed between Phospholipase A2 with beta-amyloid fragment, Lys-Gly-Ala-Ile-Ile-Gly-Leu-Met at 1.8 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 3JTI

Classification: HYDROLASE

Total Structure Weight: 13971.64

Macromolecule Entities
Molecule Chains Length Organism Details
Phospholipase A2 isoform 3 A 119 Naja sagittifera EC#: 3.1.1.4 IUBMB
Mutation: Q20A, V47T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
octapeptide from Amyloid beta A4 protein B 8 Homo sapiens Fragment: UNP residues 699-706
Gene Name(s): APP Gene View A4 AD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.171
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 42.76 α = 90.00
b = 42.76 β = 90.00
c = 65.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-09-12
  • Released Date: 2010-07-21
  • Deposition author(s): Pandey, N., Mirza, Z., Vikram, G., Singh, N., Bhushan, A., Kaur, P., Srinivasan, A., Sharma, S., Singh, T.P.

Revision History

  • Version 1_0: 2010-07-21

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance