3IVZ

Crystal structure of hyperthermophilic nitrilase

Structural Biology Knowledgebase: 3IVZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.176
  • R-Value Work: 0.131

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3IVZ

Classification: HYDROLASE

Total Structure Weight: 59575.17

Macromolecule Entities
Molecule Chains Length Organism Details
Nitrilase A, B 262 Pyrococcus abyssi EC#: 3.5.5.1 IUBMB
Mutation: Y238S
Gene Name(s): PYRAB13990 PAB1449
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSX
Query on CSX
A, B L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.176
  • R-Value Work: 0.131
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.17 α = 90.00
b = 59.17 β = 90.00
c = 127.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-09-02
  • Released Date: 2010-09-22
  • Deposition author(s): Raczynska, J., Vorgias, C., Antranikian, G., Rypniewski, W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name