3III

1.95 Angstrom Crystal Structure of CocE/NonD family hydrolase (SACOL2612) from Staphylococcus aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.145

Literature

Macromolecules
Sequence Display for 3III

Classification: HYDROLASE

Total Structure Weight: 65390.38

Macromolecule Entities
Molecule Chains Length Organism Details
CocE/NonD family hydrolase A 560 Staphylococcus aureus Gene Name(s): SACOL2612
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLM
Query on PLM

A PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 74.50 α = 90.00
b = 74.50 β = 90.00
c = 210.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-08-01
  • Released Date: 2009-08-18
  • Deposition author(s): Osinski, T., Chruszcz, M., Domagalski, M.J., Cymborowski, M., Shumilin, I.A., Skarina, T., Onopriyenko, O., Zimmerman, M.D., Savchenko, A., Edwards, A., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2009-08-18

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance