3IIE

1-deoxy-D-xylulose 5-phosphate reductoisomerase from Yersinia pestis.

Structural Biology Knowledgebase: 3IIE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 3IIE

Classification: OXIDOREDUCTASE

Total Structure Weight: 86996.91

Macromolecule Entities
Molecule Chains Length Organism Details
1-deoxy-D-xylulose 5-phosphate reductoisomerase A, B 401 Yersinia pseudotuberculosis EC#: 1.1.1.267 IUBMB
Gene Name(s): dxr YPK_1070
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 121.46 α = 90.00
b = 121.46 β = 90.00
c = 86.92 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-31
  • Released Date: 2009-08-11
  • Deposition author(s): Osipiuk, J., Mulligan, R., Stam, J., Anderson, W.F., Joachimiak, A.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4