3I3O

2.06 Angstrom resolution crystal structure of a short chain dehydrogenase from Bacillus anthracis str. 'Ames Ancestor' in complex with NAD-acetone


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.161

Literature

Macromolecules
Sequence Display for 3I3O

Classification: OXIDOREDUCTASE

Total Structure Weight: 259888.20

Macromolecule Entities
Molecule Chains Length Organism Details
Short chain dehydrogenase A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 291 Bacillus anthracis Gene Name(s): GBAA_0748 AB163_28115 AB164_12495 AB165_25960 AB166_28870 AB167_14730 AB168_19250 AB169_22400 AB170_16395 AB171_19140 AB893_04135 ADT20_19550 ADT21_01125 BF27_1170
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAE
Query on NAE

A, B, C, D, E, F, H NICOTINAMIDE ADENINE DINUCLEOTIDE ACETONE ADDUCT
C24 H31 N7 O15 P2
SGHBFOOIAAJJMI-YDKVLQLQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CAC
Query on CAC

A, B, C, D, E, F, G, H CACODYLATE ION
dimethylarsinate (Synonym)
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, H MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 131.76 α = 90.00
b = 168.16 β = 90.00
c = 107.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-30
  • Released Date: 2009-08-04
  • Deposition author(s): Halavaty, A.S., Minasov, G., Skarina, T., Onopriyenko, O., Peterson, S., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2009-08-04

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance