Structure of an argonaute complexed with guide DNA and target RNA duplex containing two mismatches.     DOI:10.2210/pdb3hxm/pdb   NDB ID: NA0071

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Primary Citation       Molecular Description Hide Classification: Nucleic Acid Binding Protein/dna/rna Structure Weight: 89590.82   Molecule: Argonaute Polymer: 1 Type: polypeptide(L) Length: 685 Chains: A Molecule: DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3') Polymer: 2 Type: polydeoxyribonucleotide Length: 21 Chains: C Molecule: RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*UP*CP*AP*CP*UP*AP*CP*CP*UP*CP*GP*U)-3') Polymer: 3 Type: polyribonucleotide Length: 20 Chains: Y       Source Hide Polymer: 1 Scientific Name: Thermus thermophilus hb27 Expression System: Escherichia coli   Polymer: 2 Scientific Name: Synthetic construct   Polymer: 3 Scientific Name: Synthetic construct         Related PDB Entries Hide Id Details 3DLB  Same protein complexed with 10-nt DNA guide strand  3DLH  Same protein complexed with same DNA guide strand  3F73  another crystal form of argonaute complexed with the same DNA guide strand and RNA target duplex.  3HGE  Mutant protein D546N complexed with same DNA guide and 20-nt RNA taget containing one nucleic acid bulge  3HJF  Mutant protein D546E complexed with same DNA guide and 15-nt RNA guide  3HK2  Mutant protein D478N complexed with same DNA guide and 19-nt RNA guide        Ligand Chemical Component Hide Identifier Name Formula Interaction View Links MG     MAGNESIUM ION Mg Ligand Explorer       Derived Data Hide PFAM Classification - (1 Domains) GO Terms - (1 Terms)     Reset Layout

Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors and generated by PISA (software)         Deposition Summary Hide Authors:   Wang, Y.,   Li, H.,   Sheng, G.,   Patel, D.J. Deposition:   2009-06-21 Release:   2009-10-06 Last Modified (REVDAT):   2009-10-20       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:   Resolution[Å]: 3.10 R-Value: 0.221 (work) R-Free: 0.276 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 121.84 α = 90.00  b = 118.87 β = 114.79  c = 59.19 γ = 90.00