3HXI

Crystal structure of Schistosome eIF4E complexed with m7GpppG and 4E-BP

Structural Biology Knowledgebase: 3HXI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.218

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3HXI

Classification: TRANSLATION

Total Structure Weight: 25474.28

Macromolecule Entities
Molecule Chains Length Organism Details
Eukaryotic Translation Initiation 4E A 189 Schistosoma mansoni
Eukaryotic translation initiation factor 4E-binding protein 1 C 21 Homo sapiens Fragment: residues 51-67
Gene Name(s): EIF4EBP1 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTG
Query on GTG

A 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE
MRNA CAP ANALOG N7-METHYL GPPPG (Synonym)
C21 H30 N10 O18 P3
FHHZHGZBHYYWTG-INFSMZHSSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GTG N/A in BindingDB
N/A in BindingMoad
Kd: 470 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.218
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.31 α = 90.00
b = 125.33 β = 90.00
c = 37.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-20
  • Released Date: 2009-08-25
  • Deposition author(s): Liu, W., Zhao, R., Jones, D.N.M., Davis, R.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4