3HXG

Crystal structure of Schistsome eIF4E complexed with m7GpppA and 4E-BP

Structural Biology Knowledgebase: 3HXG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3HXG

Classification: TRANSLATION

Total Structure Weight: 25458.29

Macromolecule Entities
Molecule Chains Length Organism Details
Eukaryotic Translation Initiation Factor 4E A 189 Schistosoma mansoni
Eukaryotic translation initiation factor 4E-binding protein 1 C 21 Homo sapiens Fragment: residues 51-67
Gene Name(s): EIF4EBP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTA
Query on GTA

A P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
7-METHYL-GPPPA (Synonym)
C21 H30 N10 O17 P3
QQOHNVHGNZYSBP-XPWFQUROSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GTA N/A in BindingDB
Kd: 270 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.210
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.56 α = 90.00
b = 125.40 β = 90.00
c = 37.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-20
  • Released Date: 2009-08-25
  • Deposition author(s): Liu, W., Zhao, R., Jones, D.N.M., Davis, R.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4