Crystal structure of T. thermophilus Argonaute E546 mutant protein complexed with DNA guide strand and 15-nt RNA target strand     DOI:10.2210/pdb3hjf/pdb   NDB ID: NA0005

3HJF Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Primary Citation       Molecular Description Hide Classification: Nucleic Acid Binding Protein/dna/rna Structure Weight: 88027.89   Molecule: Argonaute Polymer: 1 Type: polypeptide(L) Length: 685 Chains: A Mutation: D546E Molecule: 5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3' Polymer: 2 Type: polydeoxyribonucleotide Length: 21 Chains: X Molecule: 5'-R(*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*G)-3' Polymer: 3 Type: polyribonucleotide Length: 15 Chains: Y       Source Hide Polymer: 1 Scientific Name: Thermus thermophilus hb27 Expression System: Escherichia coli   Polymer: 2 Scientific Name: Synthetic construct   Polymer: 3 Scientific Name: Synthetic construct         Related PDB Entries Hide Id Details 3DLB  wild type protein complexed with shorter DNA guide strand  3DLH  wild type protein complexed with DNA guide strand  3f73  wild type protein complexed with DNA guide strand target with two mismatches.  3HGE  Different mutant at the same site complexed with DNA taget with one nucleic acid bulge        Ligand Chemical Component Hide Identifier Name Formula Interaction View Links MG     MAGNESIUM ION Mg Ligand Explorer       Derived Data Hide PFAM Classification - (1 Domains) GO Terms - (1 Terms)     Reset Layout

Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors and generated by PISA (software)         Deposition Summary Hide Authors:   Wang, Y.,   Li, H.,   Sheng, G.,   Patel, D.J. Deposition:   2009-05-21 Release:   2009-10-06 Last Modified (REVDAT):   2009-10-20       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:   Resolution[Å]: 3.06 R-Value: 0.205 (obs.) R-Free: 0.255 Space Group: P 43 21 2 Unit Cell:   Length [Å] Angles [°] a = 111.87 α = 90.00  b = 111.87 β = 90.00  c = 177.04 γ = 90.00