3HID

Crystal structure of adenylosuccinate synthetase from Yersinia pestis CO92

Structural Biology Knowledgebase: 3HID SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 3HID

Classification: LIGASE

Total Structure Weight: 47600.69

Macromolecule Entities
Molecule Chains Length Organism Details
Adenylosuccinate synthetase A 432 Yersinia pestis EC#: 6.3.4.4 IUBMB
Gene Name(s): purA YPO0378 y0635 YP_0534
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG6
Query on PG6

A 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- ETHOXY}-ETHANE
C12 H26 O6
DMDPGPKXQDIQQG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.160
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.90 α = 90.00
b = 68.90 β = 90.00
c = 199.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-19
  • Released Date: 2009-06-02
  • Deposition author(s): Zhang, R., Zhou, M., Peterson, S., Anderson, W., Joachimiak, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4