3HH5

New azaborine compounds bind to the T4 lysozyme L99A cavity - 1-ethyl-2-hydro-1,2-azaborine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 3HH5

Classification: HYDROLASE

Total Structure Weight: 18965.46

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme A 164 Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Mutation: C54T, C97A, L99A
Gene Name(s): E
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HED
Query on HED

A 2-HYDROXYETHYL DISULFIDE
C4 H10 O2 S2
KYNFOMQIXZUKRK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
B24
Query on B24

A 1-ethyl-1,2-dihydro-1,2-azaborinine
2-AZABORINE, (Synonym)
C6 H10 B N
CXNLOBXKEIGPFX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.163
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 59.99 α = 90.00
b = 59.99 β = 90.00
c = 95.47 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-14
  • Released Date: 2009-10-13
  • Deposition author(s): Liu, L., Matthews, B.W.

Revision History

  • Version 1_0: 2009-10-13

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance