3HFR

Crystal structure of glutamate racemase from Listeria monocytogenes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 3HFR

Classification: ISOMERASE

Total Structure Weight: 60447.89

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate racemase A, B 269 Listeria monocytogenes EC#: 5.1.1.3 IUBMB
Gene Name(s): murI racE lmo1237
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
6JZ
Query on 6JZ

A, B 3,6,9,12,15-pentaoxaheptadecane
Part of Jeffamine (Synonym)
C12 H26 O5
HYDWALOBQJFOMS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 66.65 α = 90.00
b = 66.65 β = 90.00
c = 257.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-12
  • Released Date: 2009-06-09
  • Deposition author(s): Majorek, K.A., Chruszcz, M., Zimmerman, M.D., Klimecka, M.M., Cymborowski, M., Skarina, T., Onopriyenko, O., Stam, J., Otwinowski, Z., Anderson, W.F., Savchenko, A., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2009-06-09

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance