3H2Y

Crystal structure of YqeH GTPase from Bacillus anthracis with dGDP bound

Structural Biology Knowledgebase: 3H2Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 3H2Y

Classification: HYDROLASE

Total Structure Weight: 42066.28

Macromolecule Entities
Molecule Chains Length Organism Details
GTPase family protein A 368 Bacillus anthracis Gene Name(s): yqeH GBAA_4562 AB163_20705 AB164_16220 AB165_11130 AB166_03100 AB167_20995 AB168_24585 AB169_05835 AB170_09045 AB171_10655 AB893_22175 ABW01_11390 ADK18_22045 ADT20_04870 ADT21_14005 BASH2_01396 BF27_3156
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DGI
Query on DGI

A 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
CIKGWCTVFSRMJU-KVQBGUIXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 83.13 α = 90.00
b = 58.99 β = 99.38
c = 77.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-04-15
  • Released Date: 2009-06-16
  • Deposition author(s): Brunzelle, J.S., Anderson, S.M., Xu, X., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor