3GT8

Crystal structure of the inactive EGFR kinase domain in complex with AMP-PNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 3GT8

Classification: TRANSFERASE

Total Structure Weight: 153562.27

Macromolecule Entities
Molecule Chains Length Organism Details
Epidermal growth factor receptor A, B, C, D 330 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: inactive protein kinase (UNP residues 651-977)
Mutation: V924R
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Unknown peptide X 11 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, D PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
X L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.216
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 61.76 α = 90.00
b = 72.41 β = 101.74
c = 143.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-27
  • Released Date: 2009-07-21
  • Deposition author(s): Jura, N., Endres, N.F., Engel, K., Deindl, S., Das, R., Lamers, M.H., Wemmer, D.E., Zhang, X., Kuriyan, J.

Revision History

  • Version 1_0: 2009-07-21

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance