3GSY

Structure of berberine bridge enzyme in complex with dehydroscoulerine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 3GSY

Classification: OXIDOREDUCTASE

Total Structure Weight: 59853.30

Macromolecule Entities
Molecule Chains Length Organism Details
Reticuline oxidase; Berberine bridge-forming enzyme A 519 Eschscholzia californica EC#: 1.21.3.3 IUBMB
Gene Name(s): BBE1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DEH
Query on DEH

A 2,9-dihydroxy-3,10-dimethoxy-5,6-dihydroisoquino[3,2- a]isoquinolinium
C19 H18 N O4
DRAPVRZDBZHUPL-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.162
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 68.94 α = 90.00
b = 68.94 β = 90.00
c = 247.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-27
  • Released Date: 2009-06-30
  • Deposition author(s): Winkler, A., Macheroux, P., Gruber, K.

Revision History

  • Version 1_0: 2009-06-30

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance