3GQI

Crystal Structure of activated receptor tyrosine kinase in complex with substrates


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.249

Literature

Macromolecules
Sequence Display for 3GQI

Classification: Transferase / Transferase inhibitor

Total Structure Weight: 65292.34

Macromolecule Entities
Molecule Chains Length Organism Details
Basic fibroblast growth factor receptor 1 A 326 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: Protein kinase domain
Mutation: C488A, Y583F, C584S, Y585F
Gene Name(s): FGFR1 Gene View BFGFR CEK FGFBR FLG Gene View FLT2 HBGFR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Phospholipase C-gamma-1 B 226 Rattus norvegicus EC#: 3.1.4.11 IUBMB
Fragment: tandem SH2 domains
Gene Name(s): Plcg1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DVT
Query on DVT

A DECAVANADATE
O28 V10
FKOQYXSGCWCSSR-NVZDZIBXAF
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACP
Query on ACP

A PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE (Synonym)
C11 H18 N5 O12 P3
UFZTZBNSLXELAL-IOSLPCCCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
A L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.249
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 133.93 α = 90.00
b = 64.60 β = 96.50
c = 94.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-24
  • Released Date: 2009-08-18
  • Deposition author(s): Bae, J.H., Lew, E.D., Yuzawa, S., Tome, F., Lax, I., Schlessinger, J.

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2012-03-21
    Type: Database references